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apache-mod-passenger and base64 v0.1.1+ gem conflict #293

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alexskr opened this issue Nov 15, 2023 · 0 comments
Open

apache-mod-passenger and base64 v0.1.1+ gem conflict #293

alexskr opened this issue Nov 15, 2023 · 0 comments

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@alexskr
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alexskr commented Nov 15, 2023

We are getting the following error in staging when faraday gem is updated from 2.7.10 -> 2.7.11 and newrelic 9.5.0 -> 9.6.0

You have already activated base64 0.1.0, but your Gemfile requires base64 0.1.1. Since base64 is a default gem, you can either remove your dependency on it or try updating to a newer version of bundler that supports base64 as a default gem. (Gem::LoadError)

this error pops in staging which runs apache/mod-passenger web sever and is not reproducable when running app with thin server or passenger stand-alone server.

Both faraday 2.7.11 and newrelic 9.6.0 gems add base64 gem dependency which triggers the install of 0.1.1+ base64 gem but passenger seem to pick up base64 library v0.1.0 which is bundled in with ruby 3.0.6.

the solution is to pin base64 to v0.1.0 in the Gemfile

jvendetti added a commit that referenced this issue Nov 15, 2023
syphax-bouazzouni pushed a commit to ontoportal/ontoportal_web_ui that referenced this issue Jan 16, 2024
…onward (#17)

* Bump bootstrap from 4.1.0 to 5.2.3

* Refactor home page cards

* Refactor top navigation bar

* Fix close buttons on dismissible alerts

* Refactor sticky footer code

* Repair Admin tabbed interface

* Refactor form to fix spacing issues

* Remove unused styles

* Remove unnecessary nested fluid container

* Refactor form to fix spacing issues

* Fix alignment issue with annotator plus spinner

* Fix broken tabbed navigation for ontology tabs

* Remove text decoration in the ontology info bar

* Clean up display of ontology information buttons

* Restore bold font in ontology metadata cards

* Restore bold font for submissions header

* Remove anchor text decoration for metadata cards

* Restore border at the top of the submissions table

* Remove bottom border from show more subs cell

* Restore top borders to details and metrics tables

* Fix add proposal dropdown button

* Fix class permalink dialog

* Fix create new mapping dialog

* Fix add and remove synonym dialogs

* Adjust buttons on create mapping dialog

* Refactor create new mapping form

* Add back platforms overwritten during merge

* Refactor horizontal form to fix spacing issues

* Restore padding in class details pane

* Refactor class search form to fix spacing issues

* Restore appearance of search links

* Restore left alignment in ontology column

* add download link for OntoPortal Virtual Appliance v3.2.1

* Restore link appearance in ontology column

* Refactor form to fix spacing and alignment issues

* Fix footer layout and presentation issues

* Remove text-decoration for ontology visits

Also prevent wrapping of column header text

* Fix node obsoletion form

* Fix node rename form

* jQuery toggle no longer needed

* Fix create and remove synonym dialog forms

* Fix jump to input group

* Remove text decoration for details and mappings

* Replace Uglifier with Terser

Fixes Uglifier::Error that prevents asset precompilation

* Pin graphql gem to less than 2.1

* Pin base64 gem to 0.1.0

See ncbo#293

* Remove text decoration from ontology list

* Restore space underneath filter text box

* Add download link for Virtual Appliance v3.2.2

* Use regular dropdown instead of split type

* Display site notices above loading splash div

Prevents a jumpy page appearance when the ontologies loading message is displayed

* Update Gemfile.lock

* Adjust font size for autocomplete results list

Resolves #296

* Fix login requirement for notes email subscriptions

The sanitize method was stripping the href attribute. See #298.

* Encode user ID portion of subscriptions params

Resolves #300

* Fix Uncaught TypeError on notes emails subscribe

See #298

* Fix some RuboCop warnings

* Refactor subscribed_to_ontology? method

Account for the case where the user parameter doesn't have the ontology attribute loaded on the list of associated subscription objects

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Co-authored-by: Alex Skrenchuk <[email protected]>
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