Transport and Covariance Matrices #743

cemitch99 · 2024-10-15T18:06:04Z

This is a duplicate of the draft PR#714 owned by cemitch99.

general structure
- use amrex::SmallMatrix
distribution init of covariance matrix
return transport matrices in each element
user-defined, thin linear element (kick) User-Defined Linear Map #538 User-provided linear matrix element #703
push for user-defined linear element
push for covariance matrix
- ImpactX::evolve -> ImpactX::track_particles Introduce sim.track_particles() #741
- add: ImpactX::track_envelope

General structure. Co-authored-by: Chad Mitchell <[email protected]>

Update initialization of LinearMap element.

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Finish implementation of LinearMap element push.

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Initialize covariance matrix from distribution parameters.

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…ance-and-transport-maps

Remove unnecessary ,.

Correct naming in elements.cpp binding for LinearMap.

src/particles/elements/mixin/lineartransport.H

+        {
+        }
+
+        //LinearTransport () = default;


Correct argument declaration for Python bindings of LinearMap in elements.cpp.

Document "Name" parameter in LinearMap.

src/initialization/InitDistribution.cpp

Modify zero-initialization of CovarianceMatrix cv.

ax3l and others added 14 commits September 24, 2024 15:34

[Draft] Transport and Covariance Matrices

4e2a733

General structure. Co-authored-by: Chad Mitchell <[email protected]>

Update InitElement.cpp

5d09112

Update initialization of LinearMap element.

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7d95ca5

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Update LinearMap.H

65c9bd0

Finish implementation of LinearMap element push.

[pre-commit.ci] auto fixes from pre-commit.com hooks

2ad47d2

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Update InitDistribution.cpp

c2fe2be

Initialize covariance matrix from distribution parameters.

Add Drift return linear map.

a5df0a3

Use LinearMap struct in Drift.H.

b2f158c

Merge branch 'development' into topic-covariance-and-transport-maps

0044f78

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cd4c989

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Merge remote-tracking branch 'mainline/development' into topic-covari…

a9888ce

…ance-and-transport-maps

Transport/Covariane: Use SmallMatrix

817cc51

Add Python bindings for LinearMap element.

1ef158e

Update elements.cpp

ccad983

Remove unnecessary ,.

cemitch99 changed the title ~~Topic covariance and transport maps~~ Transport and Covariance Matrices Oct 15, 2024

Update elements.cpp

2b288db

Correct naming in elements.cpp binding for LinearMap.

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src/particles/elements/mixin/lineartransport.H

{

}

//LinearTransport () = default;

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cemitch99 and others added 4 commits October 23, 2024 15:15

Update elements.cpp

06718d8

Correct argument declaration for Python bindings of LinearMap in elements.cpp.

Add LinearMap to 'Named' elements.

2e57e91

Update LinearMap.H

911fbec

Document "Name" parameter in LinearMap.

Modify LinearMap Python bindings.

ac6556c

cemitch99 commented Nov 5, 2024

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Update src/initialization/InitDistribution.cpp

0444b5d

cemitch99 commented Nov 5, 2024

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cemitch99 added 2 commits November 5, 2024 11:44

Update src/initialization/InitDistribution.cpp

fa67921

Update InitDistribution.cpp

d460272

Modify zero-initialization of CovarianceMatrix cv.

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Transport and Covariance Matrices #743

Transport and Covariance Matrices #743

cemitch99 commented Oct 15, 2024 •

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Transport and Covariance Matrices #743

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