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@gao-lab

Gao Lab

Bioinformatics and Computational Genomics

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  1. GLUE GLUE Public

    Graph-linked unified embedding for single-cell multi-omics data integration

    Python 386 57

  2. Guideline-for-Computational-Biology-and-Bioinformatics Guideline-for-Computational-Biology-and-Bioinformatics Public

    317 95

  3. Cell_BLAST Cell_BLAST Public

    A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

    Python 87 13

  4. SLAT SLAT Public

    Spatial-Linked Alignment Tool

    Python 82 7

  5. CPC2_standalone CPC2_standalone Public

    Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

    Python 23 12

  6. ePooling ePooling Public

    Expectation pooling: An effective and interpretable method of pooling for predicting DNA-protein binding

    Python 17 3

Repositories

Showing 10 of 30 repositories
  • SPARKLE Public
    gao-lab/SPARKLE’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 26, 2024
  • DECIPHER Public

    DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data

    gao-lab/DECIPHER’s past year of commit activity
    Python 10 MIT 0 0 0 Updated Nov 16, 2024
  • PASSAGE Public

    Phenotype Associated Spatial Signature Analysis with Graph-based Embedding

    gao-lab/PASSAGE’s past year of commit activity
    Jupyter Notebook 17 MIT 1 0 0 Updated Sep 30, 2024
  • SVEN Public

    Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model

    gao-lab/SVEN’s past year of commit activity
    Python 1 0 0 0 Updated Sep 29, 2024
  • SEERS Public
    gao-lab/SEERS’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Sep 20, 2024
  • Gastric-Cancer-Lymph-Node-Metastasis Public
    gao-lab/Gastric-Cancer-Lymph-Node-Metastasis’s past year of commit activity
    R 0 0 0 0 Updated Sep 3, 2024
  • Cell_BLAST Public

    A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

    gao-lab/Cell_BLAST’s past year of commit activity
    Python 87 MIT 13 7 0 Updated Jul 23, 2024
  • SLAT Public

    Spatial-Linked Alignment Tool

    gao-lab/SLAT’s past year of commit activity
    Python 82 MIT 7 1 1 Updated Jun 8, 2024
  • GLUE Public

    Graph-linked unified embedding for single-cell multi-omics data integration

    gao-lab/GLUE’s past year of commit activity
    Python 386 MIT 57 16 2 Updated Feb 23, 2024
  • SLE-ImmuneAtlas Public

    scRNA and scVDJ analysis for SLE samples

    gao-lab/SLE-ImmuneAtlas’s past year of commit activity
    Jupyter Notebook 9 1 0 0 Updated Sep 24, 2023
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