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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.1k 366

  2. UNI UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 352 49

  3. TriPath TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    Python 92 7

  4. CONCH CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 281 22

  5. TANGLE TANGLE Public

    Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024

    Python 83 3

  6. PANTHER PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    Jupyter Notebook 97 11

Repositories

Showing 10 of 29 repositories
  • HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024

    mahmoodlab/HEST’s past year of commit activity
    Python 164 12 5 0 Updated Nov 23, 2024
  • SurvPath Public

    Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024

    mahmoodlab/SurvPath’s past year of commit activity
    Python 110 4 4 0 Updated Nov 19, 2024
  • MADELEINE Public

    MADELEINE: multi-stain slide representation learning (ECCV'24)

    mahmoodlab/MADELEINE’s past year of commit activity
    Python 33 4 1 1 Updated Oct 15, 2024
  • TANGLE Public

    Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/TANGLE’s past year of commit activity
    Python 83 3 4 0 Updated Oct 15, 2024
  • TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    mahmoodlab/TriPath’s past year of commit activity
    Python 92 7 0 0 Updated Sep 16, 2024
  • PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/PANTHER’s past year of commit activity
    Jupyter Notebook 97 11 2 0 Updated Sep 16, 2024
  • MMP Public

    Multimodal prototyping for cancer survival prediction - ICML 2024

    mahmoodlab/MMP’s past year of commit activity
    Jupyter Notebook 55 7 1 0 Updated Sep 16, 2024
  • UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 352 49 15 1 Updated Sep 12, 2024
  • CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    mahmoodlab/CONCH’s past year of commit activity
    Python 281 22 4 1 Updated Aug 9, 2024
  • CLAM Public

    Open source tools for computational pathology - Nature BME

    mahmoodlab/CLAM’s past year of commit activity
    Python 1,132 GPL-3.0 366 14 6 Updated Jul 31, 2024
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